PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471527.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 387aa    MW: 43446.5 Da    PI: 8.0989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.9e-07326378346
                      SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                       W  eE+e l ++vkq+ +       W++I +       ++Rt+ ++k++w +
   XP_016471527.1 326 LWRHEEEEMLEEGVKQFSTTvnkniPWRKILELGRhvfdQTRTPTDLKDKWKQ 378
                      69*****************************9999****************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.8E-9557IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.09E-8559IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002492.6E-5853IPR001965Zinc finger, PHD-type
PROSITE patternPS013590952IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.155319380IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-7320382IPR009057Homeodomain-like
SuperFamilySSF466894.99E-7322381IPR009057Homeodomain-like
SMARTSM007173.9E-5323382IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGPSEKEICI KCEKGGEVLA CADIYCPIAV HVRCMGCPAR FDDLGKFYCP YCLYKKTIAK  60
IYQAKEHVLS KKQALHAFID KEMIDSVRHV PSIVSKSTCE RAVEPLPENK SEVPQSNCDQ  120
QRVVGQQIHS GAVVACGSEP SDHTSSKATA TDFRVLETGN RVQVNDLQEV GAHQLEKSVQ  180
DHHQDNHLSN SCVAEEEKLE NELVLKETKR NSVEIAGEQM IGADQTTATF LKADPSLLQH  240
LKGKRRVETG DSTCSESKPV STQRKPGKLV NKVRDEHMVT DSPRRLTRTS ASLLENSNLA  300
GQLVQVKQPS MLLPVELPNG KRKRVLWRHE EEEMLEEGVK QFSTTVNKNI PWRKILELGR  360
HVFDQTRTPT DLKDKWKQIC SKYGGRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801590.10.0PREDICTED: uncharacterized protein LOC104247318 isoform X1
RefseqXP_009801591.10.0PREDICTED: uncharacterized protein LOC104247318 isoform X1
RefseqXP_016471527.10.0PREDICTED: uncharacterized protein LOC107793649 isoform X1
RefseqXP_016471528.10.0PREDICTED: uncharacterized protein LOC107793649 isoform X1
TrEMBLM1D2J60.0M1D2J6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000798440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910